Welcome to the COMEDI user documentation!


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Aims

  • COMEDI is a Matlab library for computational analysis of neuroscience.

  • COMEDI aims to construct a free, open-source, and cross-platform one-stop project for computational neuroscience.

Features

  • COMEDI provides a uniform I/O interface for most of the formats.

  • COMEDI provides a unique API to call third-party software (e.g., FSL, MRtrix3, Dipy).

  • COMEDI follows the BIDS style for data analysis.

  • COMEDI provides the implements with multiple cores of a CPU, as well GPU.

  • COMEDI provides the command line interface, an essential requirement to write scripts for processing big data in computer grids.

  • COMEDI supports for easy and high quality visualizations with D3.js.

Note

We provides the latest source, the released source, and the precompiled binaries

Warning

This manual is showcasing the very basic tools of COMEDI. It is far from complete, but it’s a start! Any feedback is always welcome…

Use of the COMEDI software package in published works should be accompanied by the following citations:

  1. Wu, Y., Ahmad, S., Huynh, K.M., Liu, S., Thung, KH., Lin, W., P.-T. Yap, 2021. An Automated Processing Pipeline for Diffusion MRI in the Baby Connectome Project, ISMRM, May 15-20, 2021.

Tip

Make sure to use the version of this documentation that matches your version of this software. You can select the version on the lower left of this page.

Table of Contents

Install

Getting started

Notion

Resource:

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