Publications

Ahmad2020

Ahmad, Sahar, Ye Wu, Khoi Minh Huynh, Kim-Han Thung, Weili Lin, Dinggang Shen, and Pew-Thian Yap. 2020. Fast Correction of Eddy-Current and Susceptibility-Induced Distortions Using Rotation-Invariant Contrasts. In Medical Image Computing and Computer Assisted Intervention – MICCAI 2020, 34–43. Springer, Cham.

Hong2020

Hong, Yoonmi, Wei-Tang Chang, Geng Chen, Ye Wu, Weili Lin, Dinggang Shen, and Pew-Thian Yap. 2020. Multifold Acceleration of Diffusion MRI via Slice-Interleaved Diffusion Encoding (SIDE). arXiv [physics.med-Ph]. arXiv. http://arxiv.org/abs/2002.10908.

Huynh2019a

Huynh, Khoi Minh, Geng Chen, Ye Wu, Dinggang Shen, and Pew-Thian Yap. 2019. Multi-Site Harmonization of Diffusion MRI Data via Method of Moments. IEEE Transactions on Medical Imaging 38 (7): 1599–1609.

Huynh2019b

Huynh, Khoi Minh, Jaeil Kim, Geng Chen, Ye Wu, Dinggang Shen, and Pew-Thian Yap. 2019. Longitudinal Harmonization for Improving Tractography in Baby Diffusion MRI. In Computational Diffusion MRI, 183–91. Springer, Cham.

Huynh2020a

Huynh, Khoi Minh, Ye Wu, Kim-Han Thung, Sahar Ahmad, Hoyt Patrick Taylor IV, Dinggang Shen, and Pew-Thian Yap. 2020. Characterizing Intra-Soma Diffusion with Spherical Mean Spectrum Imaging. In Medical Image Computing and Computer Assisted Intervention – MICCAI 2020, 354–63. Springer, Cham.

Huynh2019d

Huynh, Khoi Minh, Ye Wu, Kim-Han Thung, Geng Chen, Weili Lin, Dinggang Shen, and Pew-Thian Yap. 2019. Biases of Microstructure Models in Baby Diffusion MRI. In Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM).

Huynh2019e

Huynh, Khoi Minh, Tiantian Xu, Ye Wu, Geng Chen, Kim-Han Thung, Haiyong Wu, Weili Lin, Dinggang Shen, and Pew-Thian Yap. 2019. Probing Brain Micro-Architecture by Orientation Distribution Invariant Identification of Diffusion Compartments. In Medical Image Computing and Computer Assisted Intervention – MICCAI 2019, 547–55. Springer, Cham.

Huynh2020b

Huynh, Khoi Minh, Tiantian Xu, Ye Wu, Kim-Han Thung, Geng Chen, Weili Lin, Dinggang Shen, and Pew-Thian Yap. 2019. Characterizing Non-Gaussian Diffusion in Heterogeneously Oriented Tissue Microenvironments. In Medical Image Computing and Computer Assisted Intervention – MICCAI 2019, 556–63. Springer, Cham.

Huynh2020c

Huynh, Khoi Minh, Tiantian Xu, Ye Wu, Xifeng Wang, Geng Chen, Haiyong Wu, Kim-Han Thung, Weili Lin, Dinggang Shen, and Pew-Thian Yap. 2020. Probing Tissue Microarchitecture of the Baby Brain via Spherical Mean Spectrum Imaging. IEEE Transactions on Medical Imaging 39 (11): 3607–18.

Li2019

Li, Guoshi, Yujie Liu, Yanting Zheng, Ye Wu, Pew-Thian Yap, Shijun Qiu, Han Zhang, and Dinggang Shen. 2019. Identification of Abnormal Circuit Dynamics in Major Depressive Disorder via Multiscale Neural Modeling of Resting-State fMRI. In International Conference on Medical Image Computing and Computer-Assisted Intervention, 682–90. Springer, Cham.

Liu2019

Liu, Feihong, Jun Feng, Geng Chen, Ye Wu, Yoonmi Hong, Pew-Thian Yap, and Dinggang Shen. 2019. DeepBundle: Fiber Bundle Parcellation with Graph Convolution Neural Networks. In Graph Learning in Medical Imaging, 88–95. Springer, Cham.

MaierHein2017

Maier-Hein, Klaus H., Peter F. Neher, Jean-Christophe Houde, Marc-Alexandre Cote, Eleftherios Garyfallidis, Jidan Zhong, Maxime Chamberland, et al. 2019. The Challenge of Mapping the Human Connectome Based on Diffusion Tractography (vol 8, 1349, 2017). Nature Communications 10.

Nath2017

Nath, Vishwesh, Kurt G. Schilling, Prasanna Parvathaneni, Yuankai Huo, Justin A. Blaber, Allison E. Hainline, Muhamed Barakovic, et al. 2020. Tractography Reproducibility Challenge with Empirical Data (TraCED): The 2017 ISMRM Diffusion Study Group Challenge. Journal of Magnetic Resonance Imaging: JMRI 51 (1): 234–49.

Sun2019

Sun, Peng, Ye Wu, Geng Chen, Jun Wu, Dinggang Shen, and Pew-Thian Yap. 2019. Tissue Segmentation Using Sparse Non-Negative Matrix Factorization of Spherical Mean Diffusion MRI Data. In Computational Diffusion MRI, 69–76. Springer, Cham.

Taylor2019

Taylor, Hoyt Patrick, IV, Zhengwang Wu, Ye Wu, Dinggang Shen, Han Zhang, and Pew-Thian Yap. 2019. Automated Parcellation of the Cortex Using Structural Connectome Harmonics. In Medical Image Computing and Computer Assisted Intervention – MICCAI 2019, 475–83. Springer.

Wu2015a

Wu, Ye, Yuanjing Feng, Fei Li, and Carl Fredrik Westin. 2015. Global Consistency Spatial Model for Fiber Orientation Distribution Estimation. In 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), 1180–83. IEEE.

Wu2018a

Wu, Ye, Yuanjing Feng, Dinggang Shen, and Pew-Thian Yap. 2018a. A Multi-Tissue Global Estimation Framework for Asymmetric Fiber Orientation Distributions. In Medical Image Computing and Computer Assisted Intervention – MICCAI 2018, 45–52. Springer, Cham.

Wu2020a

Wu, Ye, Yoonmi Hong, Sahar Ahmad, Wei-Tang Chang, Weili Lin, Dinggang Shen, and Pew-Thian Yap. 2020. Globally Optimized Super-Resolution of Diffusion MRI Data via Fiber Continuity. In Medical Image Computing and Computer Assisted Intervention – MICCAI 2020, 260–69. Springer, Cham.

Wu2020b

Wu, Ye, Yoonmi Hong, Sahar Ahmad, Weili Lin, Dinggang Shen, and Pew-Thian Yap. 2020. Tract Dictionary Learning for Fast and Robust Recognition of Fiber Bundles. In Medical Image Computing and Computer Assisted Intervention – MICCAI 2020, 251–59. Springer, Cham.

Wu2020c

Wu, Ye, Yoonmi Hong, Sahar Ahmad, Weili Lin, and Pew-Thian Yap. n.d. White Matter Tract Atlases of the Baby Brain.

Wu2020d

Wu, Ye, Yoonmi Hong, Yuanjing Feng, Dinggang Shen, and Pew-Thian Yap. 2020. Mitigating Gyral Bias in Cortical Tractography via Asymmetric Fiber Orientation Distributions. Medical Image Analysis 59 (January): 101543.

Wu2019a

Wu, Ye, Weili Lin, Dinggang Shen, and Pew-Thian Yap. 2019a. Improving Tractography in Baby Diffusion MRI via Asymmetric Spectrum Imaging. In Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM).

Wu2019b

Wu, Ye, Weili Lin, Dinggang Shen, Pew-Thian Yap, Unc/umn Baby Connectome Project Consortium, and Others. 2019. Asymmetry Spectrum Imaging for Baby Diffusion Tractography. In International Conference on Information Processing in Medical Imaging, 319–31. Springer, Cham.

Wu2014

Wu, Ye, Youyou Xu, Yuanjing Feng, Chengfeng Gao, and Fei Li. 2014. A New Model-Based Spherical Deconvolution Method for Multi-Fiber Reconstruction. In 2014 9th IEEE Conference on Industrial Electronics and Applications, 1456–60. IEEE.

Wu2018b

Wu, Ye, Fan Zhang, Nikos Makris, Yuping Ning, Isaiah Norton, Shenglin She, Hongjun Peng, et al. 2018. Investigation into Local White Matter Abnormality in Emotional Processing and Sensorimotor Areas Using an Automatically Annotated Fiber Clustering in Major Depressive Disorder. NeuroImage 181 (November): 16–29.

Xu2017

Xu, Tiantian, Yuanjing Feng, Ye Wu, Qingrun Zeng, Jun Zhang, Jianzhong He, and Qichuan Zhuge. 2017. A Novel Richardson-Lucy Model with Dictionary Basis and Spatial Regularization for Isolating Isotropic Signals. PloS One 12 (1): e0168864.

Xu2014

Xu, Youyou, Yuanjing Feng, Yanpeng Niu, and Ye Wu. 2014. ESTIMATION OF FIBER ORIENTATION DISTRIBUTION WITH NON-NEGATIVE CONSTRAINTED HIGHER ORDER TENSOR DECONVOLUTION. Journal of Systems Science and Mathematical Sciences. Xitong Kexue Yu Shuxue, 07.

Wu2015b

Ye, Wu, Feng Yuanjing, Li Fei, and Gao Chengfeng. 2015. A Novel Fiber Orientation Distribution Reconstruction Method Based on Dictionary Basis Function Framework. Chinese Journal of Biomedical Engineering, 03.

Yue2021

Yue, Ling, Dan Hu, Han Zhang, Junhao Wen, Ye Wu, Wei Li, Lin Sun, et al. 2021. Prediction of 7-Year’s Conversion from Subjective Cognitive Decline to Mild Cognitive Impairment. Human Brain Mapping 42 (1): 192–203.

Yue2019

Yue, Ling, Dan Hu, Han Zhang, Junhao Wen, Ye Wu, Tao Wang, Dinggang Shen, and Shifu Xiao. 2019a. Prediction of 7-Year Progression from Subjective Cognitive Decline to MCI. In OHBM, Rome, Italy, June 9-13, 2019.

Zhang2019a

Zhang, Fan, Ye Wu, Isaiah Norton, and Lauren J. O’Donnell. 2019. White Matter Parcellation Test-Retest Reproducibility of Diffusion MRI Tractography Fiber Clustering. In Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM).

Zhang2019b

Zhang, Fan, Ye Wu, Isaiah Norton, Yogesh Rathi, Alexandra J. Golby, and Lauren J. O’Donnell. 2019. Test-Retest Reproducibility of White Matter Parcellation Using Diffusion MRI Tractography Fiber Clustering. Human Brain Mapping 40 (10): 3041–57.

Zhang2018a

Zhang, Fan, Ye Wu, Isaiah Norton, Yogesh Rathi, Nikos Makris, and Lauren J. O’Donnell. 2018. A Data-Driven Groupwise Fiber Clustering Atlas for Consistent White Matter Parcellation and Anatomical Tract Identification of Subjects across the Lifespan. In Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM).

Zhang2018b

Zhang, Fan, Ye Wu, Isaiah Norton, Laura Rigolo, Yogesh Rathi, Nikos Makris, and Lauren J. O’Donnell. 2018. An Anatomically Curated Fiber Clustering White Matter Atlas for Consistent White Matter Tract Parcellation across the Lifespan. NeuroImage 179 (October): 429–47.

Zhang2020a

Zhang, Huifeng, Lena Palaniyappan, Yan Wu, Enchao Cong, Chuangxin Wu, Lei Ding, Feng Jin, et al. 2020. The Concurrent Disturbance of Dynamic Functional and Structural Brain Connectome in Major Depressive Disorder: The Prefronto-Insular Pathway. Journal of Affective Disorders 274 (September): 1084–90.

Zhang2016

Zhang, Jun, Tiantian Xu, Yuanjing Feng, Ye Wu, Yongqiang Li, Jianzhong He, and Siqi Zhou. 2016. A Self-Adaptive Local Feature Extraction Based Magnetic Resonance Imaging. In 2016 Chinese Control and Decision Conference (CCDC), 6563–67. IEEE.